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The Wermeling lab at the Karolinska Institutet

– Research related to Autoimmunity, Cancer immunotherapy and CRISPR/Cas9

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“Bring me a gene”- A Capella Science

(as recommended by professor Tomas Ekström, CMM)

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Author fredrikwermelingPosted on December 12, 2016December 12, 2016

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  • Welcome!
  • Links
  • TIDE --> Identification of Indel frequencies in a CRISPR targeted cell population

Recent Posts

  • New video – Generating a read count file from your custom CRISPR screen using Greenlisted and CRISPRAnalyzeR
  • Genome-wide libraries for CRISPRi (Dolcetto) and CRISPRa (Calabrese)!
  • Great links for making sense of TCR nomenclature!
  • “10 Best Science Podcasts About CRISPR”
  • Interesting study describing the transcriptional response of HSCs to CRISPR from the Porteus lab
  • “Accurate analysis of genuine CRISPR editing events with ampliCan”
  • Am I ready for CRISPR? A user’s guide to genetic screens by Dr. John G. Doench.
  • iBiology – A fantastic series of biology videos. Highly recommended!
  • Depmap (Broad Institute and collaborators) – Full genomic CRISPR screens >500 cancer cell lines (and counting).
  • I made a new video about how to look at FASTQ files from a CRISPR screen experiment using Excel (not recommended)

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